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Genetic variation in porcine AGPAT5 for the identification of a missense vari...
This dataset contains the experimental data associated to the publication "Identification of a missense variant in the porcine AGPAT gene family associated with intramuscular... -
OLIN-studierna
The Obstructive Lung Disease in Northern Sweden (OLIN) Studies, is a research program ongoing since 1985. It includes descriptive, analytic and interventional epidemiologic... -
Proteomanalys av phycobiliprotein-antenner hos kryptofyt-algen Guillardia the...
Plants and algae have developed various light-harvesting mechanisms for optimal delivery of excitation energy to the photosystems. Cryptophyte algae have evolved a novel soluble... -
GoNL SNPs and Indels release 5
Summary counts of SNV and small indels <20bp from only the parents (498 individuals) from the Genome of the Netherlands (GoNL) project. -
ICEscreen
ICEscreen is a bioinformatic pipeline for the detection and annotation of ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements). -
Brassicaceae transposable elements copies and Arabidopsis thaliana annotations
The Brassicaceae TE copies from Arabidopsis thaliana Col-0 ecotype, Arabidopsis lyrata, Capsella rubella, Arabis alpina, Brassica rapa and Schrenkiella parvula, used for Duster... -
Transposable element annotation of Botrytis cinerea B05.10
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the... -
Transposable element annotation of Arabidopsis lyrata subsp. lyrata
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have... -
Amaizing Dent Panel Genotyping Dataset (354 Public Lines)
Genotyping matrix of a collection of 354 dent maize inbred lines corresponding to the "Public Amaizing Dent Panel". This panel includes: (i) 254 dent inbred lines from "Drops... -
A new version of the grapevine reference genome assembly (12X.v2) and of its ...
Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the... -
Development of a new version of the grapevine reference genome assembly (12X....
Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the... -
Amplification bias in aDNA
Background: Repetitive microsatellite DNA forms a universal component of eukaryote genomes. These repeats provide well-recognized bioinformatics challenges, for instance when... -
SRQR Checklist for protocol paper
Standards for Reporting Qualitative Research (SRQR) Checklist for paper: Mixed-methods evaluation of the NHS Genomic Medicine Service for rare diseases: study protocol -
Presentations - 3,000 year old Egyptian emmer wheat
Presentations summarise the results of a project analysing whole-genome sequences of archaeological emmer wheat specimens from Egypt (https://doi.org/10.1038/s41477-019-0534-5). -
Imputation and QTL Mapping in Multiparental Crop Populations from Low Coverag...
Posters describing the use of low-coverage sequence data to impute genotypes in multiparental populations of wheat and rice. The posters also show results from an integrated... -
Supporting data for the paper Role of the mobilome in the global disseminatio...
The mobile resistance gene blaNDM encodes the NDM enzyme which hydrolyses carbapenems, a class of antibiotics used to treat some of the most severe bacterial infections. blaNDM... -
CATH protein domain classification (version 4.2)
CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they...
