Transposable element annotation of Arabidopsis lyrata subsp. lyrata

Dataset

DOI

After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot on this library, we filtered the consensus having at least one FLC (Full Length Copy). This library is inserted in RepetDB. We have launched a second TEannot on this library, and we have inserted the statistical data of this second annotation. Be careful, this TE library have not been manually curated. It is provided “as is”, i.e. a direct output of the REPET pipeline. Genome annotation files and TE consensus ID mapping between previous and new classification are available for download.

REPET TEdenovo, 2.5

REPET TEannot, 2.5

https://www.ncbi.nlm.nih.gov/assembly/?term=GCA_000004255.1

Identifier
DOI	https://doi.org/10.15454/INYUVZ
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/INYUVZ

Provenance
Creator	Quesneville, Hadi
Publisher	Recherche Data Gouv
Contributor	Quesneville, Hadi; URGI; Research Unit of Genomics Info
Publication Year	2018
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Quesneville, Hadi (INRA - Institut National de la Recherche Agronomique); URGI (INRA - Institut National de la Recherche Agronomique)

Representation
Resource Type	Dataset
Version	1.0
Discipline	Agriculture, Forestry, Horticulture; Life Sciences; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Basic Biological and Medical Research; Biology; Medicine; Omics; Plant Science
Spatial Coverage	Versailles, France