41 datasets found

Sequencing of several clinical isolates of different species

High-quality (HQ) reference genomes are essential for understanding the phylogeny and function of uncultured microbes in complex microbial ecosystems. However, existing...

Single colony and metagenomic samples for the ReNEW publication Raw sequence reads

We compare quantitative polymerase chain reaction with colony forming units derived from three different plating medias. PDA, PDA with chloramphenicol and DRBC with...

Isolates recovered from wastewater in Ontario Canada Raw sequence reads

Sanxingdui site is one of the major archaeological achievements in China, and has attracted the attention of the world for the first time to find a large number of precious...

This SRA project contains raw sequencing data for WGS, Tn-Seq, and whole-transcriptome RNA-Seq of massively expanded synthetic genomes - and associated background strains -...

Wastewater has a predominant role for Public Health as source, reservoir and vehicle of antimicrobial resistance genes. This role is especially critical in developing countries...

The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

MBL-resistant P.aeruginosa from an Austrian Hospital outbreak

Raw sequence reads and whole genome assemblies for 16 strains from the HAMBI culture collection (University of Helsinki)

Infections with antimicrobial resistant organisms are an important cause of morbidity and mortality worldwide and an ever-growing public health concern. The ability of tracking...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Cover crops, a soil conservation practice, are amongst tools that can contribute to reducing disease pressure caused by Pseudomonas syringae, considered as one of the most...

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources...

Metagenomic and genome sequences from samples collected from the primary effluent of wastewater around Baltimore, MD.

Here we present the NGS results of our barcode stability and safety experiments for all the species barcoded in the project.

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.