Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems

DOI

50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. For more specific analysis enzyme-linked immunosorbent assay (ELISA) was used for detection of fucoidan and arabinogalactan-protein glycan as described in the following studies (Vidal-Melgosa et al., 2021 and Cornuault et al., 2014). In short, 100 µL of sediment extracts were added to a pre-coated 96-well plate and incubated overnight at 4°C. The signal was developed using primary antibodies, BAM1 (fucoidan) and JIM13 (arabinogalactan-protein glycan), diluted 1:10 in skim milk PBS solution, followed by anti-rat antibody at a 1:1000 dilution in the same solution. Absorbance was measured at 450 nm using a Spectramax Id3 plate reader (Molecular Devices).

The samples were analysed on 2024-08-07 including the processing blanks for ELISA analysis.

Identifier
DOI https://doi.pangaea.de/10.1594/PANGAEA.979912
Related Identifier References https://doi.org/10.1111/tpj.12504
Related Identifier References https://doi.org/10.1038/s41467-021-21009-6
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.979912
Provenance
Creator Hellige, Inga ORCID logo; Akeerath Mundanatt, Aman
Publisher PANGAEA
Publication Year 2025
Funding Reference Federal Ministry of Education and Research https://doi.org/10.13039/501100002347 Crossref Funder ID 03F0896E https://foerderportal.bund.de/foekat/jsp/SucheAction.do?actionMode=view&fkz=03F0896E DAM CDRmare - sea4soCiety, University of Bremen
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 3060 data points
Discipline Earth System Research
Spatial Coverage (-75.683W, 4.661S, 103.440E, 54.692N); Colombia
Temporal Coverage Begin 2021-11-08T00:00:00Z
Temporal Coverage End 2022-10-11T00:00:00Z