River Thames eDNA temporal metabarcoding study: Results from data filtering

DOI

Sequencing results from filtering raw sequence data from environmental DNA metabarcoding samples of River Thames fish communities.

Samples were collected from two sites during 2019 over 12 months from the Thames Basin, London, U.K., sampling a minimum of every week. Site 1. River Lee (freshwater) and site 2. Richmond Lock, Thames River (tidal). Samples were amplified with the primer set MiFish-U. 

The file is an Excel workbook of the sequencing results from filtering the raw sequence data (file "Temporal_eDNA_GC-EC-9225.tar.gz") through the pipeline DADA2: providing ASV IDs, sample and ASV table with readcounts, and fish names.

For further information on filtering settings see the published paper.

Hallam J, Clare EL, Jones JI, Day JJ. (2023) Fine-scale environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics. Environmental DNA. DOI:10.1002/edn3.486

Identifier
DOI https://doi.org/10.5522/04/23684637.v2
Related Identifier https://ndownloader.figshare.com/files/42879466
Metadata Access https://api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=oai:figshare.com:article/23684637
Provenance
Creator Hallam, Jane; Clare, Elizabeth; Jones, John Iwan; Day, Julia ORCID logo
Publisher University College London UCL
Contributor Figshare
Publication Year 2023
Rights https://creativecommons.org/publicdomain/zero/1.0/
OpenAccess true
Contact researchdatarepository(at)ucl.ac.uk
Representation
Language English
Resource Type Dataset
Discipline Biospheric Sciences; Ecology; Geosciences; Natural Sciences