The NA64-Mesozooplankton dataset contains biogeochemistry and mesozooplankton data collected in a series of 9 cruises in the Northern Adriatic completed from January 1965 to September 1965 monthly, and December 1965. Biogeochemistry sampling was undertaken using 5L Nansen bottles fired at 0m, 5m, 10m, 20m, 30m and/or bottom depths. The dataset includes 709 samples analysed for nitrate, phosphate, temperature, salinity and density. Mesozooplankton sampling was undertaken at the same locations as for biogeochemistry, using two different net (Hensen non-closing and Appstein closing net). The dataset includes 146 samples analysed for mesozooplankton composition (at higher taxonomic level), abundance and volume settlement.After sedimentation and volume measurement, the fish larva and fish eggs were extracted from samples (egss of Engraulis encrasicholus were determined). Chaetognaths were partly isolated. Identification at higher taxonomic level of zooplankters was completed. Taxonomic identification was done at Smithonian Mediterranean Centre in Salambo. After sedimentation and volume measurement, the fish larva and fish eggs were extracted from samples (egss of Engraulis encrasicholus were determined). Chaetognaths were partly isolated. Identification at higher taxonomic level of zooplankters was completed. Taxonomic identification was done at Smithonian Mediterranean Centre in Salambo.