Genome and transcriptome of chum salmon (Oncorhynchus keta)

Chum salmon (Oncorhynchus keta) is a species of anadromous salmon native with the widest geographic range of the Pacific salmonids. Chum salmon is the second largest of the Pacific salmon behind Chinook and is the most plentiful Pacific salmon by overall biomass. They are often referred to by the common names dog salmon – a reference to enlarged teeth in maturing males that give the appearance of dog-like appearance – or calico salmon – a reference to coloration patterns in sexually mature fish. Self-sustaining populations are distributed from coastal Oregon to the MacKenzie River in the Northwest territories, and from the east side of the Korean peninsula and Northern Japan north through to the Lena River in Northern Russian. This work aims to establish genomic baseline resource for the species by assembling a reference genome from a Chum salmon doubled-haploid. Gene annotation is provided by Illumina RNA-seq across 19 distinct tissues. Resequencing of chum salmon, sampled across its range aims to categorize geographic variation genome-wide.

Identifier
Source https://data.blue-cloud.org/search-details?step=~01263121A318CD3B5FB1147CA303DADC0F3924D8044
Metadata Access https://data.blue-cloud.org/api/collections/63121A318CD3B5FB1147CA303DADC0F3924D8044
Provenance
Instrument Illumina HiSeq 2500; HiSeq X Ten; Illumina NovaSeq 6000; Sequel; ILLUMINA; PACBIO_SMRT
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Coverage Begin 1997-01-01T00:00:00Z
Temporal Coverage End 2020-08-22T00:00:00Z