Metagenomic and metatranscriptomic time-series datasets from samples taken off the coast of Southern California via automated daily sampling

In 2014, the Fuhrman lab at USC deployed a high-frequency automated environmental sampler off the coast of Southern California (about 1-2 km from Catalina Island). This project was named the ESP project, which was launched to understand microbial succession and interaction at a short time scale. The sampler took samples once or twice daily, which were used to prepare amplicon, metagenomic and metatranscriptomic libraries. The rRNA amplicon sequences have been deposited at PRJEB22356.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012A2A3008049B00961755248C5EAA48CDD57E01838
Metadata Access https://data.blue-cloud.org/api/collections/A2A3008049B00961755248C5EAA48CDD57E01838
Provenance
Instrument Illumina NovaSeq 6000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor University of Southern California
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-118.508W, 33.483S, -118.508E, 33.483N)
Temporal Coverage Begin 2014-03-18T00:00:00Z
Temporal Coverage End 2014-05-01T00:00:00Z