DaRUS - Repositories

GraphML file for homologues and reconstructed ancestors of arylsulfatases and...

Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood...

Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).

Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker...

GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of...

Conserved positions in expansin homologues

Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence...

Expansin homologues in actinobacterial genomes from South Africa

Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of...

Occurrence of expansins in the tree of life

Comparison between expansins found in the Expansin Engineering Database (ExED) and literature.

Expansin domains in CBM63 sequences

The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were...

GraphML files for protein sequence networks of expansin homologues

GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence...

Profile hidden Markov models of the ExED

Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins. A profile hidden Markov model (HMM) was...

Query sequences for the update of the ExED

Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).

Query sequences for the update of the LccED

Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).

The modular structure of alpha/beta-hydrolases: similarity of the N- and C-te...

To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase...

Data related to Panzer: A Machine Learning Based Approach to Analyze Supersec...

This entry contains the data used to implement the bachelor thesis. It was investigated how embeddings can be used to analyze supersecondary structures. Abstract of the thesis:...

Data for: 'EnzymeML-based modeling workflow: from raw data to kinetic paramet...

Kinetic parameter estimates for small laccase (SLAC) catalyzed oxidation of ABTS, investigated across the temperature range between 25 °C and 45°C. This dataset contains the...