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Self-diffusion coefficients of simulated aqueous glycerol mixtures
In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the... -
Self-diffusion coefficients of simulated aqueous methanol mixtures
In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the... -
Densities of simulated aqueous glycerol mixtures
In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the... -
Densities of simulated aqueous methanol mixtures
In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the... -
Data for: FAIR and scalable management of small-angle X-ray scattering data
This dataset contains small-angle X-ray scattering (SAXS) measurements on various octyltrimethylammonium bromide (OTAB)/water and octyltrimethylammonium chloride (OTAC)/water... -
Profile hidden Markov model for PETase homologues
Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid... -
GraphML files for sequence networks of PETases and PURases
The GraphML files contain the sequence networks and annotated metadata for protein sequences. The GraphML attributes for the edges comprise the edge weights (pairwise sequence... -
Consensus sequences of arylsulfatases and phosphonate monoester hydrolases
A multiple sequence alignment was constructed by Clustal Omega for the 95 protein sequences annotated as homologues of arylsulfatases and the 85 protein sequences annotated as... -
Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and re...
Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed... -
Sequence cross-references and taxonomic lineage for glycoside hydrolase famil...
The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists... -
Data related to Panzer: A Machine Learning Based Approach to Analyze Supersec...
This entry contains the data used to implement the bachelor thesis. It was investigated how embeddings can be used to analyze supersecondary structures. Abstract of the thesis:... -
GraphML file for homologues and reconstructed ancestors of arylsulfatases and...
Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood... -
Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/). -
Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker... -
GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of... -
Conserved positions in expansin homologues
Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence... -
Expansin homologues in actinobacterial genomes from South Africa
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of... -
Occurrence of expansins in the tree of life
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. -
Expansin domains in CBM63 sequences
The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were... -
GraphML files for protein sequence networks of expansin homologues
GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence...
