Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset

DOI

Exemplar dataset demonstrating the use of MIAPPE as described in "Enabling reusability of plant phenomic datasets with MIAPPE 1.1".

Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardizing data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalization of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.

The following examplar dataset are available :

INRA wheat dataset INRA poplar dataset iBET cork oak dataset VIB maize dataset 1 (Baute et al., 2015) VIB maize dataset 2 (Dell’Acqua et al., 2015) VIB maize dataset 3 (Baute et al., 2016) IPK Arabidopsis dataset IPK barley dataset

Identifier
DOI https://doi.org/10.15454/1YXVZV
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/1YXVZV
Provenance
Creator Papoutsoglou, Evangelia A. ORCID logo; Faria, Daniel (ORCID: 0000-0003-1511-277X); Arend, Daniel ORCID logo; Arnaud, Elizabeth ORCID logo; Athanasiadis, Ioannis N. ORCID logo; Chaves, Inês ORCID logo; Coppens, Frederik ORCID logo; Cornut, Guillaume; Costa, Bruno V. ORCID logo; Ćwiek-Kupczyńska, Hanna; Droesbeke, Bert ORCID logo; Finkers, Richard ORCID logo; Gruden, Kristina ORCID logo; Junker, Astrid ORCID logo; King, Graham J. ORCID logo; Krajewski, Paweł ORCID logo; Lange, Matthias (ORCID: 0000-0002-4316-078X); Laporte, Marie-Angélique ORCID logo; Michotey, Célia; Oppermann, Markus ORCID logo; Ostler, Richard ORCID logo; Poorter, Hendrik ORCID logo; Ramı́rez-Gonzalez, Ricardo ORCID logo; Ramšak, Živa ORCID logo; Reif, Jochen C. (ORCID: 0000-0002-6742-265X); Rocca-Serra, Philippe ORCID logo; Sansone, Susanna-Assunta ORCID logo; Scholz, Uwe ORCID logo; Tardieu, François ORCID logo; Uauy, Cristobal ORCID logo; Usadel, Björn ORCID logo; Visser, Richard G.F. ORCID logo; Weise, Stephan ORCID logo; Kersey, Paul J. (ORCID: 0000-0002-7054-800X); Miguel, Célia M. (ORCID: 0000-0002-1427-952X); Adam-Blondon, Anne-Françoise ORCID logo; Pommier, Cyril ORCID logo
Publisher Recherche Data Gouv
Contributor Pommier, Cyril; Evangelia A. Papoutsoglou
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Pommier, Cyril (INRA - Institut National de la Recherche Agronomique); Evangelia A. Papoutsoglou (Plant Breeding, Wageningen University & Research, PO Box 386, 6700AJ, Wageningen, The Netherlands)
Representation
Resource Type Dataset
Version 1.1
Discipline Agriculture, Forestry, Horticulture; Plant Science