Enterococcus faecium Genome sequencing and assembly

During the last 2 decades, VRE</p><p>have become significant nosocomial pathogens worldwide,</p><p>mainly due to their adaptability in hospital environments and the</p><p>limited treatment options. Nine types of glycopeptide resistance</p><p>determinants (vanA, vanB, vanC, vanD, vanE, vanG, vanL, vanM,</p><p>and vanN) have been reported and well characterized on the basis</p><p>of phenotypic and genotypic criteria.</p><p>We first reported the vanM gene in a vancomycin-resistant</p><p>Enterococcus faecium (VREm) clinical isolate from a teaching hospital</p><p>in Shanghai in 2006. Subsequently, only a single study</p><p>from Singapore has reported vanM-type VRE isolates.Therefore we performed whole genome sequencing of three Enterococcus faecium isolates to validate the way of vanM transduction using bioinformatics.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0121475C136CB013A3F271F4AA5EBB1D8E3CDAB82FF
Metadata Access https://data.blue-cloud.org/api/collections/1475C136CB013A3F271F4AA5EBB1D8E3CDAB82FF
Provenance
Instrument Illumina Genome Analyzer; PacBio RS II; ILLUMINA; PACBIO_SMRT
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-58.580W, -62.130S, -58.580E, -62.130N)
Temporal Coverage Begin 2011-02-20T00:00:00Z
Temporal Coverage End 2015-04-17T00:00:00Z