The diatom Thalassiosira pseudonana grown in mesocosms at contemporary and elevated CO2 over the diel cycle

To test whether elevated CO2 , which drives seawater below pH 7.9, would shift the dynamical expression patterns diatoms in a more natural environment, we designed a controlled mesocosm study at Friday Harbor Laboratories (FHL) Ocean Acidification Environmental Laboratory (OAEL). Briefly, four independent mesocosm tanks were set up with continuous flow (10-12 mL/min) of filtered seawater from the Puget Sound to simulate mid-century (pH 7.9) and acidified oceanic conditions (pH 7.6) in duplicate. Mesocosm reservoirs were supplemented with nutrients and inoculated with T. pseudonana acclimated in FHL seawater. Mesocosms were outfitted with custom enclosures to simulate a 12:12 light:dark diel cycle. Cells for RNA extraction were sampled in the middle of the light and dark cycle and sequenced on Illumina NextSeq 500 platform. Overall design: Duplicate mesocosms at mid-century (pH 7.9) and acidified oceanic conditions (pH 7.6) were inoculated with T. pseudonana and grown over a 12:12 diel cycle (275 µM photons/m2/s). Cells were collected for gene expression analysis in the middle of the light and dark cycle over 2 days. Result: 16 total transcriptomes (n=4 at pH 7.9 in the light, n=4 at pH 7.9 in the dark, n=4 at pH 7.6 in the light, and n=4 at pH 7.6 in the dark).

Identifier
Source https://data.blue-cloud.org/search-details?step=~0127524EBC736536DB100AFEB71C98D9CFEE3C6F84E
Metadata Access https://data.blue-cloud.org/api/collections/7524EBC736536DB100AFEB71C98D9CFEE3C6F84E
Provenance
Instrument NextSeq 500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2021-03-15T00:00:00Z