Xenorhabdus kozodoii FR48 epigenetic data

DOI

DNA methylation was determined using the ds_modification_motif_analysis protocol within SMRT Link 5.1.0 which uses an in silico kinetic reference and a Welch’s t-test based kinetic score detection of modified base positions with parameters set as follow: subread/polymerase read length >= 500, polymerase read quality >= 80 and modification QV >= 30. A score of 30 for the “Modification QV” is the default threshold for calling a position as modified, and corresponds to a p-value of 0.001.

SMRT Link, 5.1.0

Identifier
DOI https://doi.org/10.57745/IW6GGB
Related Identifier https://doi.org/10.3390/ijms231911981
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/IW6GGB
Provenance
Creator Brillard, Julien; Legrand, Ludovic (ORCID: 0000-0001-9634-709X)
Publisher Recherche Data Gouv
Contributor Legrand, Ludovic; Brillard, Julien; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2022
Funding Reference INRAE Plant Health and Environment (SPE) SPE2017-DiscriMet ; French National Research Agency EPI-PATH, ANR-17-CE20-0005
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Legrand, Ludovic (INRAE); Brillard, Julien (INRAE)
Representation
Resource Type Dataset
Format application/octet-stream; text/tab-separated-values
Size 17003337; 753
Version 1.1
Discipline Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences