Quantification of the gene expression in a strain collection of Escherichia coli containing AIEC (Adherent Invasive Escherichia coli) and non-AIEC (non-Adherent Invasive Escherichia coli) strains by RT-qPCR. Each file contains the quantification of different genes included in this study, corresponding to the four Fluidigm chips used to quantify gene expression:

"Fluidigm1": Quantification of the genes gapA, 0163, 0408, 0410, 0413, 0414, 0415, 0420, 0422, 0577, 0938, 1003, 1063, 1154, 1184, 1196, 1688, 1689, 1690, 1728, 1971, 2009, 2033, 2505, 2523, 2896, 2902, 2903, 2904, 3227

"Fluidigm2": Quantification of the genes chiA, fimH, 0036, 0512, 0794, 1058, 1255, 1256, 1257, 1395, 1396, 1397, 1815, 2831, 2857, 3046, 3163, 0354, 0418, 0511, 0912, 1071, 1198, 1838, 1935, 1983, 2730, 3029

"Fluidigm3": Quantification of the genes aidA, adiC, gapA, potE, 0410b, 0410c, 0410d, 0410e, 0410f, 0601, 3029a, 3029b, 3046a, 3046b, 3172a, 3172b in the SN fraction

"Fluidigm4": Quantification of the genesaidA, adiC, gapA, potE, 0410b, 0410c, 0410d, 0410e, 0410f, 0601, 3029a, 3029b, 3046a, 3046b, 3172a, 3172b in the A/I fraction