Replication data for "Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology"

DOI

This study focuses on bacterial 16S and fungal ITS metabarcoding of topsoil, leaf phyllosphere, and endosphere in grape plots with high and low susceptibility to downy mildew. Samples were collected over two consecutive years, in the springs of 2022 and 2023, when the vines were at the phenological stage of 2-3 unfolded leaves, before the onset of the first symptoms of downy mildew.

The dataverse contain the R project including input, r scripts and last version ogf phyloseq objects

Identifier
DOI https://doi.org/10.57745/XNEH5O
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/XNEH5O
Provenance
Creator PaolaFOURNIER ORCID logo; Lucile, PELLAN; Aarti JASWA; Marine CAMBON ORCID logo; Alexandre CHATAIGNER; Olivier BONNARD; Marc RAYNAL; Christian DEBORD; Charlotte POEYDEBAT ORCID logo; Simon LABARTHE ORCID logo; François DELMOTTE ORCID logo; Patrice THIS ORCID logo; Corinne VACHER ORCID logo
Publisher Recherche Data Gouv
Contributor Fournier, Paola; Vacher, Corinne; Entrepôt-Catalogue Recherche Data Gouv
Publication Year 2024
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Fournier, Paola (INRAE, Bordeaux Sciences Agro, ISVV, SAVE, Villenave-d’Ornon, France); Vacher, Corinne (INRAE, Bordeaux Sciences Agro, ISVV, SAVE, Villenave-d’Ornon, France)
Representation
Resource Type Dataset
Format text/x-r-notebook; text/tab-separated-values; text/csv; text/comma-separated-values; application/octet-stream; application/gzip
Size 18115; 150992; 19156; 103668; 10909; 3957742; 4145232; 2130500; 353003; 981518; 2647871; 2696498; 2689419; 2731256; 2746817; 1015926; 279782; 117338; 38894; 17881; 15771; 15879; 14659; 14702; 14661; 14694; 14705; 14701; 14663; 14703; 14664; 14689; 14712; 14698; 9352; 71939; 24606; 11451; 17751; 11322; 11244; 6961; 11965; 6184; 37742; 35893; 9234; 8967; 1302957; 1696773; 141147; 1051657; 35141; 609823; 609810; 501115; 493514; 655447; 600146; 646692; 534704; 3031; 1232; 252476; 459723; 306141; 2888928; 2932903; 2919675; 2731629; 2861696; 2773926; 2732693; 2687334; 209; 135404; 118951; 311956; 197238; 451230; 251865; 118484; 93247; 218322; 114215; 252830; 136585; 4005; 2000383; 37042; 1311691; 37477
Version 2.1
Discipline Agriculture, Forestry, Horticulture