158 datasets found

TCR Repertoire sequencing raw reads TCR alpha and beta for several species

Spiny-rayed fishes (Acanthomorpha) dominate modern marine habitats and comprise more than a quarter of all living vertebrate species1-3. It is believed that this dominance...

What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory...

What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory...

This study was an Investigation into the evolutionary history of the Grape-eye Seabass (Hemilutjanus macrophthalmos) that tested its relationships relative to other fishes and...

It is often the case that inadequate numbers of biological replicates are utilized in differential gene expression analysis. We describe an easy and effective RNA-seq approach...

This mRNA-Seq was performed to obtain the basic genetic information of the early embryonic development in medaka, Oryzias latipes. The samples of total RNA were extracted from...

Pufferfish saxitoxin and tetrodotoxin binding proteins (PSTBPs) are considered that it plays an important role in the toxification of potent toxic pufferfish, however the...

meiosis mechanism

We aim to explore the population genomics structure of Oryzias Latipes, Medaka Fish, which is an established model organism that also has a broad population in Japan and...

DNA methylation is a universal epigenetic mechanism involved in regulation of gene expression and genome stability. The DNA maintenance methylase DNMT1 ensures that DNA...

Chracterization of maternally inherited transcriptome in 1-cell stage medaka embryos originating from wild-type or mutant auts2a females

We developed a new genotyping by sequencing method using PCR amplicon with short primers. Applying the method, we examined the genotypes in the nuclear SNPs in the medaka,...

Medaka (Oryzias latipes) is a teleost fish with an XX/XY sex determination system, similar to that of mammals. However, under high temperature conditions, XX medaka is...

To determine if randomly integrated genomic fragments can autonomously determine their DNA methylation state in vivo

Teleost fish that inhabit in an aquatic environment always face osmotic problems. Freshwater fish face a hypoosmotic situation, namely, water flows into the fish body while ion...

Within vertebrate lineages, genomic imprinting is believed to be restricted to eutherian mammals and marsupials. However, comprehensive analysis of imprinted expression in...

Oryzias latipes Project

Eurythermal temperate fish are able to survive over a wide range of water temperature ranging from near zero to over 30?C throughout the year, while maintaining their normal...

FSH cell-specific RNAseq in medaka. FSH cells were collected from enzymatically dissociated pituitary of FSH-EGFP medaka. GFP positive cells were harvested. NEBNext Single...