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Plankton biodiversity monitoring by environmental DNA: a multiple marker study
In this study, a multiple-marker metabarcoding and high-throughput sequencing approach was applied to investigate the plankton diversity present in the Baltic Sea from winter to... -
Planktonic microbial communities from North Pacific Subtropical Gyre
<p> This project consists of analyses of of planktonic microbial communities in a region of the North Pacific Ocean. The Subtropical Gyre consists of a clockwise swirling... -
The draft genome sequences of the cosmopolitan centric diatom, the genus Skel...
The genus Skeletonema stands out as one of the most prevalent and globally distributed diatoms within coastal marine ecosystems. Additionally, it holds significance as a pivotal... -
oceanDNA
Environmental DNA (eDNA) has become a convenient monitoring method of biodiversity for past decade. In aquatic environment, most of study is focused on river and coastal area... -
Bangladesh Surface and Ground Water Metagenomes
Drinking water in parts of Bangladesh may be contaminated with arsenic and/or water-borne pathogens. Metagenomes from surface water and ground water samples were generated to... -
Tibetan Plateau thermokarst lakes raw sequence reads
We determined the community structure, diversity and potential functions of prokaryotic and fungal communities based on the 16S and ITS rRNA gene sequencing to evaluate the... -
Daily cycle of bacterial active community structure
Microbial communities at high altitude ecosystem spring sites, are subjected along the day to extreme changes in irradiation and temperature. Herein, we determined the... -
Diurnal variations in fluorescent dissolved organic matter in the surface sea...
To examine diurnal variations in fluorescent dissolved organic matter in the surface seawater, we carried out incubation experiments using surface seawater collected from the... -
Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1)...
The overall objective of this project (Baselines Initiative) is to generate several 16S rRNA gene databases to establish robust baseline information on the biological... -
Responses of the coastal prokaryotic community to phytoplankton-derived intra...
The goal of this study is to demonstrate a hypothesis that phytoplanktonic intracellular organic matters released by cell disruption caused during predation and extracellular... -
Seasonal_dynamics_of_sea_cucumber_gut_microbiome
Sea cucumbers are benthic deposit-feeders making a significant contribution to the maintenance of marine benthic ecosystems. Bioturbation, sediment cleaning, nutrient recycling,... -
Modeling elephant-mediated cascading effects of water point closure
This dataset contains the underlying data for the study: Hilbers, J.P., van Langevelde, F., Prins, H.H.T., Grant, C.C., Peel, M., Coughenour, M.B., de Knegt, H.J., Slotow, R.,... -
MiFish eDNA metabarcoding
The objective of this study was to test feasibility of eDNA metabarcoding for the tropical and subtropical fishes in a coral reef region. -
Bacterial 16S amplicon 454 pyrosequencing of environmental samples (vertebrat...
This study set out to evaluate the used next generation sequencing (NGS) approach in a representative and complex backwater catchment with importance as a drinking water... -
Illumina and 454-based metatranscriptomic analyses of a diatom-induced bacter...
Planktonic bacteria from marine pelagic coastal zones are much more diverse than in the open ocean and consist of members with distinct ecological niches. In this study we... -
Marine Aggregates Metagenome
Analyze the bacterial community composition of artificially produced marine aggregates on a geometric time series and associate it with the surrounding water. -
Pearl River surface water soxB Assembly
Insight into the functional genes involving in sulfur oxidation in Pearl River water -
Morisatoumi
This is part of Morisatoumi (Connectivity of Hills, Humans and Oceans) project : investigation of 32 rivers. We used environmental DNA for fish diversity survey and also... -
Monitoring harmful algal bloom species and their appearance in Tokyo Bay, Jap...
During the recent decade, metabarcoding and high-throughput sequencing (HTS) has facilitated increased detection of biodiversity, including harmful algal bloom (HAB) species. In... -
Microplastic-associated biofilms: rRNA operon profiles
This is a study of how high-density polyethylene (HDPE), polyethylene terephthalate (PET), and polystyrene (PS) are colonized by bacteria along a freshwater-estuarine gradient...