969 datasets found

Diversity of DMSP demethylation gene

Sequencing eDNA (partial 12S rRNA and 16S rRNA) from water samples to assess fishing pressures within and outside the Australian EEZ around the Cocos Keeling Islands. When using...

Characterizing and quantifying metabolism in situ remains both a central goal and challenge for environmental microbiology. Here,we used a single-cell, multi-isotope approach to...

This study compares the differences of 16S mock communities sequenced by HiSeq and MiSeq. Also, this study points out a weird HiSeq run we got.

This study aims to test 1) the performance of 515Y/926R and V4 primers using 18S mock communities, 2) the length-based biases through PCR and sequencing using mixed 16S and 18S...

Lysotracker stained seawater and associated amplicon sequences, metagenomes, and metatranscriptomes. Single cells come from marine station M2 pacific ocean on 20 march 2014....

Microbial community analysis via high-throughput sequencing of amplified 16S rRNA genes is an essential microbiology tool. We found the popular primer pair 515F (515F-C) and...

This study is a comparison of marine environmental and marine mock community samples amplified with different versions of a commonly used universal forward primer 515. A...

"Short time-scale observations are valuable for understanding microbial influence on nutrient and energy cycles. We assessed dynamics in relative abundance and potential...

This study focuses on human impacts on the microbial community in the San Pedro Channel, California, USA. Surface water was collected from the Port of Los Angeles, Two Harbors...

Phytoplankton (16S, 18S), Bacterial, Archaeal dynamics at SPOT at daily resolution

The USC Microbial Observatory (Jed Fuhrman and David Caron, PIs) focuses on exploratory investigation of prokaryotic and unicellular eukaryotic diversity in the San Pedro...

The short-term variability of microbial eukaryote assemblages were examined, from March to July, at surface water of the San Pedro Ocean Time-Series station (eastern North...

from a manuscript in prep: "Viruses are thought to influence microbial community structure by density-dependent, host-specific infection, which can be strain-specific....

This study examines monthly dynamics of marine microbial community between Jan-2005 and July-2018 from two size fractions (0.2-1.2 um and 1.2-80 um) at the San Pedro Ocean...

Nitrogen (N) can greatly influence microbial community structure and productivity through both its availability and form, but the role of specific organisms in the uptake of N...

We investigated the ability of a natural and diverse population of MGI to assimilate organic substrates using metagenomics,metatranscriptomics, and fluorescence in situ...

Bacterial biodegradation is a significant contributor to remineralization of polycyclic aromatic hydrocarbons (PAHs), which are a component of crude oil and marine diesel as...

This study primarily evaluates the monthly dynamics of the marine microbial community at the San Pedro Ocean Time-series station (SPOT near Los Angeles, CA, USA). Other marine...

This study evaluates the diversity and activity of marine archaea via 16S rRNA gene and transcript sequencing. This method is complementary to evaluation of the activity of...