Horizontal gene transfer candidates in M. incognita

DOI

Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a Diamond search against the NCBI's nr library. The following parameters were used in Alienness Taxonomic group of interest: 33208 (Metazoa; HGT of non metazoan origin in a metazoan species) Taxonomic group to exclude: 33283 (Tylenchomorpha; to ignore self hits to plant-parasitic nematodes in Clade 12) Additional taxonomic groups to classify potential donors: 3041 (Chlorophyta); 35493 (Streptophyta) M. incognita proteins with an AI>0 have a better hit to non-metazoa than metazoa and this can include possible HGT M. incognita proteins with an AI>14 have a better hit to non-metazoa than metazoa, with a magnitude of difference >1E6 and this can be considered likely HGT

Identifier
DOI https://doi.org/10.15454/W6SWZH
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/W6SWZH
Provenance
Creator Danchin, Etienne; Rancurel, Corinne
Publisher Recherche Data Gouv
Contributor Danchin, Etienne
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format application/zip; text/tab-separated-values; text/plain; application/vnd.ms-excel
Size 40241499; 201915; 7271; 12768578; 31607
Version 1.1
Discipline Geosciences; Life Sciences; Ecology; Plant Science; Biology; Omics